Index

A

accept_median (vital_sqi.calibration.threshold_estimator.SQIThreshold attribute), [1] accept_std (vital_sqi.calibration.threshold_estimator.SQIThreshold attribute), [1]

amplitude_consistency_sqi() (in module vital_sqi.sqi.rpeaks_sqi) apply_rule() (vital_sqi.rule.rule_class.Rule method)

B

Band (class in vital_sqi.rule.auto_threshold) band_energy_sqi() (in module vital_sqi.sqi.waveform_sqi)

BandpassFilter (class in vital_sqi.common.band_filter) baseline_wander() (in module vital_sqi.calibration.noise_injector) baseline_wander_sqi() (in module vital_sqi.sqi.standard_sqi)

C

calculate_band_power() (in module vital_sqi.common.power_spectrum) calculate_psd() (in module vital_sqi.common.power_spectrum) calculate_sampling_rate() (in module vital_sqi.common.utils) calculate_spectrogram() (in module vital_sqi.common.power_spectrum) calculate_wavelet_power() (in module vital_sqi.common.power_spectrum) calibrate() (in module vital_sqi.calibration.run_calibration) calibrated (vital_sqi.calibration.threshold_estimator.SQIThreshold attribute), [1] check_conflict() (in module vital_sqi.common.utils) check_signal_format() (in module vital_sqi.common.utils) check_unique_pair() (in module vital_sqi.common.utils) check_valid_signal() (in module vital_sqi.common.utils) classify_segments() (in module vital_sqi.pipeline.pipeline_functions)

classify_segments_robust() (in module vital_sqi.rule.robust_classifier) CLEAN_PROFILE_LABELS (in module vital_sqi.calibration.noise_injector) clipping_sqi() (in module vital_sqi.sqi.standard_sqi) clock_drift() (in module vital_sqi.calibration.noise_injector) colored_noise() (in module vital_sqi.calibration.noise_injector) column (vital_sqi.rule.auto_threshold.Band attribute) compute_sqi_distributions() (in module vital_sqi.calibration.sqi_runner) compute_time_and_bpm() (in module vital_sqi.common.power_spectrum) correlogram_sqi() (in module vital_sqi.sqi.rpeaks_sqi) create_rule_def() (in module vital_sqi.common.utils) cut_segment() (in module vital_sqi.common.utils) cvnn_sqi() (in module vital_sqi.sqi.hrv_sqi) cvsd_sqi() (in module vital_sqi.sqi.hrv_sqi)

D

decisions (vital_sqi.rule.robust_classifier.RobustResult attribute) decompose_operand() (in module vital_sqi.common.utils) DEGENERATE_BAND_HALF_WIDTH (in module vital_sqi.rule.auto_threshold) detect_peak_trough_adaptive_threshold() (vital_sqi.common.rpeak_detection.PeakDetector method) detect_peak_trough_ampd() (vital_sqi.common.rpeak_detection.PeakDetector method) detect_peak_trough_billauer() (vital_sqi.common.rpeak_detection.PeakDetector method) detect_peak_trough_clusterer() (vital_sqi.common.rpeak_detection.PeakDetector method) detect_peak_trough_count_orig() (vital_sqi.common.rpeak_detection.PeakDetector method) detect_peak_trough_DEFAULT() (vital_sqi.common.rpeak_detection.PeakDetector method)

detect_peak_trough_local_max_ibi() (vital_sqi.common.rpeak_detection.PeakDetector method) detect_peak_trough_moving_average_threshold() (vital_sqi.common.rpeak_detection.PeakDetector method) detect_peak_trough_slope_sum() (vital_sqi.common.rpeak_detection.PeakDetector method) detect_r_peaks_engzee() (vital_sqi.common.rpeak_detection.PeakDetector method) detect_r_peaks_hamilton() (vital_sqi.common.rpeak_detection.PeakDetector method) detect_r_peaks_pan_tompkins() (vital_sqi.common.rpeak_detection.PeakDetector method) dfa_sqi() (in module vital_sqi.sqi.hrv_sqi) dtw_distance() (in module vital_sqi.sqi.dtw_sqi) dtw_sqi() (in module vital_sqi.sqi.dtw_sqi)

E

ecg_detector() (vital_sqi.common.rpeak_detection.PeakDetector method) ecg_dynamic_template() (in module vital_sqi.common.generate_template) ECG_reader() (in module vital_sqi.data.signal_io) ECG_writer() (in module vital_sqi.data.signal_io) ectopic_sqi() (in module vital_sqi.sqi.rpeaks_sqi) entropy_sqi() (in module vital_sqi.sqi.standard_sqi) estimate_thresholds() (in module vital_sqi.calibration.threshold_estimator)

execute() (vital_sqi.rule.ruleset_class.RuleSet method) export_diagnostics() (in module vital_sqi.calibration.exporter) export_rule_dict() (in module vital_sqi.calibration.exporter) export_rules() (vital_sqi.rule.ruleset_class.RuleSet method) export_sqi_dict() (in module vital_sqi.calibration.exporter) extract_segment_sqi() (in module vital_sqi.pipeline.pipeline_functions) extract_sqi() (in module vital_sqi.pipeline.pipeline_functions)

F

file_flagged (vital_sqi.rule.robust_classifier.RobustResult attribute)

format_milestone() (in module vital_sqi.common.utils) frequency_sqi() (in module vital_sqi.sqi.hrv_sqi)

G

gaussian_noise() (in module vital_sqi.calibration.noise_injector) generate_clean_ecg() (in module vital_sqi.calibration.signal_generator) generate_clean_ppg() (in module vital_sqi.calibration.signal_generator) generate_labels() (in module vital_sqi.common.utils) generate_rule() (in module vital_sqi.pipeline.pipeline_functions) generate_timestamp() (in module vital_sqi.common.utils) get_all_features_hrva() (in module vital_sqi.sqi.hrv_sqi) get_decision() (in module vital_sqi.common.utils) get_decision_segments() (in module vital_sqi.pipeline.pipeline_functions) get_ecg_sqis() (in module vital_sqi.pipeline.pipeline_highlevel) get_inteveral_label_list() (in module vital_sqi.common.utils)

get_moving_average() (vital_sqi.common.rpeak_detection.PeakDetector method) get_nn() (in module vital_sqi.common.utils) get_ppg_sqis() (in module vital_sqi.pipeline.pipeline_highlevel) get_qualified_ecg() (in module vital_sqi.pipeline.pipeline_highlevel) get_qualified_ppg() (in module vital_sqi.pipeline.pipeline_highlevel) get_reject_segments() (in module vital_sqi.pipeline.pipeline_functions) get_ROI() (vital_sqi.common.rpeak_detection.PeakDetector method) get_sqi() (in module vital_sqi.pipeline.pipeline_functions) get_sqi_dict() (in module vital_sqi.pipeline.pipeline_functions) get_start_end_points() (in module vital_sqi.preprocess.removal_utilities) get_value_label_list() (in module vital_sqi.common.utils)

H

harmonic_interference() (in module vital_sqi.calibration.noise_injector) hf_energy_sqi() (in module vital_sqi.sqi.waveform_sqi) HiddenPrints (class in vital_sqi.common.utils)

hr_range_sqi() (in module vital_sqi.sqi.hrv_sqi) hr_sqi() (in module vital_sqi.sqi.hrv_sqi) hurst_sqi() (in module vital_sqi.sqi.hrv_sqi)

I

impulse_noise() (in module vital_sqi.calibration.noise_injector) inject_noise() (in module vital_sqi.calibration.noise_injector) interp() (in module vital_sqi.common.generate_template)

interpolate_rr_intervals() (in module vital_sqi.common.power_spectrum) interpolate_signal() (in module vital_sqi.preprocess.removal_utilities) interpolation_sqi() (in module vital_sqi.sqi.rpeaks_sqi)

K

kurtosis_sqi() (in module vital_sqi.sqi.standard_sqi)

L

lf_energy_sqi() (in module vital_sqi.sqi.waveform_sqi) lf_hf_ratio_sqi() (in module vital_sqi.sqi.hrv_sqi) load_def() (vital_sqi.rule.rule_class.Rule method)

load_ecg() (in module vital_sqi.dataset.example_data) load_ppg() (in module vital_sqi.dataset.example_data) lower (vital_sqi.calibration.threshold_estimator.SQIThreshold attribute), [1] (vital_sqi.rule.auto_threshold.Band attribute)

M

map_decision() (in module vital_sqi.pipeline.pipeline_functions) mean_crossing_rate_sqi() (in module vital_sqi.sqi.standard_sqi) mean_nn_sqi() (in module vital_sqi.sqi.hrv_sqi) median_nn_sqi() (in module vital_sqi.sqi.hrv_sqi) module vital_sqi.calibration.exporter vital_sqi.calibration.noise_injector vital_sqi.calibration.run_calibration vital_sqi.calibration.signal_generator vital_sqi.calibration.sqi_runner vital_sqi.calibration.threshold_estimator vital_sqi.common.band_filter vital_sqi.common.generate_template vital_sqi.common.power_spectrum vital_sqi.common.rpeak_detection vital_sqi.common.utils vital_sqi.data.signal_io vital_sqi.data.signal_sqi_class vital_sqi.dataset.example_data vital_sqi.pipeline.pipeline_functions vital_sqi.pipeline.pipeline_highlevel vital_sqi.preprocess.preprocess_signal vital_sqi.preprocess.removal_utilities vital_sqi.preprocess.segment_split vital_sqi.rule.auto_threshold vital_sqi.rule.robust_classifier vital_sqi.rule.rule_class vital_sqi.rule.ruleset_class vital_sqi.sqi.dtw_sqi vital_sqi.sqi.hrv_sqi vital_sqi.sqi.rpeaks_sqi vital_sqi.sqi.standard_sqi vital_sqi.sqi.waveform_sqi

motion_artifact() (in module vital_sqi.calibration.noise_injector) msq_sqi() (in module vital_sqi.sqi.rpeaks_sqi)

N

n_accept (vital_sqi.calibration.threshold_estimator.SQIThreshold attribute), [1] n_reject (vital_sqi.calibration.threshold_estimator.SQIThreshold attribute), [1] name (vital_sqi.rule.rule_class.Rule attribute)

nn_mean_sqi() (in module vital_sqi.sqi.hrv_sqi) NOISE_PROFILES (in module vital_sqi.calibration.noise_injector) note (vital_sqi.calibration.threshold_estimator.SQIThreshold attribute), [1] (vital_sqi.rule.auto_threshold.Band attribute)

O

ordinary_differential_equation() (in module vital_sqi.common.generate_template)

P

parse_datetime() (in module vital_sqi.common.utils) parse_rule() (in module vital_sqi.common.utils) PeakDetector (class in vital_sqi.common.rpeak_detection) per_beat_sqi() (in module vital_sqi.pipeline.pipeline_functions) per_rule_quantile() (in module vital_sqi.rule.auto_threshold) perfusion_sqi() (in module vital_sqi.sqi.standard_sqi) pnn_sqi() (in module vital_sqi.sqi.hrv_sqi) poincare_features_sqi() (in module vital_sqi.sqi.hrv_sqi)

polynomial_trend() (in module vital_sqi.calibration.noise_injector) powerline_noise() (in module vital_sqi.calibration.noise_injector) ppg_absolute_dual_skewness_template() (in module vital_sqi.common.generate_template) ppg_detector() (vital_sqi.common.rpeak_detection.PeakDetector method) ppg_dual_double_frequency_template() (in module vital_sqi.common.generate_template) ppg_nonlinear_dynamic_system_template() (in module vital_sqi.common.generate_template) PPG_reader() (in module vital_sqi.data.signal_io) PPG_writer() (in module vital_sqi.data.signal_io)

Q

qrs_a_sqi() (in module vital_sqi.sqi.waveform_sqi) qrs_energy_sqi() (in module vital_sqi.sqi.waveform_sqi)

quantile_band() (in module vital_sqi.rule.auto_threshold) quantile_hi (vital_sqi.rule.auto_threshold.Band attribute) quantile_lo (vital_sqi.rule.auto_threshold.Band attribute)

R

regime (vital_sqi.rule.robust_classifier.RobustResult attribute) regime_info (vital_sqi.rule.robust_classifier.RobustResult attribute) reject_median (vital_sqi.calibration.threshold_estimator.SQIThreshold attribute), [1] remove_ectopic_beats() (in module vital_sqi.sqi.rpeaks_sqi) remove_invalid_smartcare() (in module vital_sqi.preprocess.removal_utilities) remove_unchanged() (in module vital_sqi.preprocess.removal_utilities) rmssd_sqi() (in module vital_sqi.sqi.hrv_sqi)

RobustResult (class in vital_sqi.rule.robust_classifier) rr_irregularity_sqi() (in module vital_sqi.sqi.hrv_sqi) rr_process() (in module vital_sqi.common.generate_template) Rule (class in vital_sqi.rule.rule_class) rule (vital_sqi.rule.rule_class.Rule attribute) rules (vital_sqi.rule.ruleset_class.RuleSet attribute) RuleSet (class in vital_sqi.rule.ruleset_class)

S

sample_dropout() (in module vital_sqi.calibration.noise_injector) sample_entropy_sqi() (in module vital_sqi.sqi.hrv_sqi) sanitize_sqi() (in module vital_sqi.common.utils) save_def() (vital_sqi.rule.rule_class.Rule method) save_segment() (in module vital_sqi.preprocess.segment_split) scale_pattern() (in module vital_sqi.preprocess.preprocess_signal) scores (vital_sqi.rule.robust_classifier.RobustResult attribute) sdnn_sqi() (in module vital_sqi.sqi.hrv_sqi) sdsd_sqi() (in module vital_sqi.sqi.hrv_sqi) search_for_onset() (vital_sqi.common.rpeak_detection.PeakDetector method) signal_highpass_filter() (vital_sqi.common.band_filter.BandpassFilter method) signal_lowpass_filter() (vital_sqi.common.band_filter.BandpassFilter method)

signal_to_noise_sqi() (in module vital_sqi.sqi.standard_sqi) SignalSQI (class in vital_sqi.data.signal_sqi_class) skew_func() (in module vital_sqi.common.generate_template) skewness_sqi() (in module vital_sqi.sqi.standard_sqi) smooth_signal() (in module vital_sqi.preprocess.preprocess_signal) sort_rule() (in module vital_sqi.common.utils) spectral_snr_sqi() (in module vital_sqi.sqi.standard_sqi) split_segment() (in module vital_sqi.preprocess.segment_split) sqi_name (vital_sqi.calibration.threshold_estimator.SQIThreshold attribute), [1] SQIThreshold (class in vital_sqi.calibration.threshold_estimator) squeeze_template() (in module vital_sqi.common.generate_template) strictest_columns() (in module vital_sqi.rule.auto_threshold)

T

taper_signal() (in module vital_sqi.preprocess.preprocess_signal) thresholds_to_dataframe() (in module vital_sqi.calibration.threshold_estimator)

time_shift() (in module vital_sqi.calibration.noise_injector) trim_signal() (in module vital_sqi.preprocess.removal_utilities) tuned_bands() (in module vital_sqi.rule.auto_threshold)

U

update_def() (vital_sqi.rule.rule_class.Rule method) update_info() (vital_sqi.data.signal_sqi_class.SignalSQI method) update_rule() (in module vital_sqi.common.utils) update_sampling_rate() (vital_sqi.data.signal_sqi_class.SignalSQI method)

update_signals() (vital_sqi.data.signal_sqi_class.SignalSQI method) update_start_datetime() (vital_sqi.data.signal_sqi_class.SignalSQI method) upper (vital_sqi.calibration.threshold_estimator.SQIThreshold attribute), [1] (vital_sqi.rule.auto_threshold.Band attribute)

V

vhf_norm_power_sqi() (in module vital_sqi.sqi.waveform_sqi) vital_sqi.calibration.exporter module vital_sqi.calibration.noise_injector module vital_sqi.calibration.run_calibration module vital_sqi.calibration.signal_generator module vital_sqi.calibration.sqi_runner module vital_sqi.calibration.threshold_estimator module vital_sqi.common.band_filter module vital_sqi.common.generate_template module vital_sqi.common.power_spectrum module vital_sqi.common.rpeak_detection module vital_sqi.common.utils module vital_sqi.data.signal_io module vital_sqi.data.signal_sqi_class module vital_sqi.dataset.example_data module

vital_sqi.pipeline.pipeline_functions module vital_sqi.pipeline.pipeline_highlevel module vital_sqi.preprocess.preprocess_signal module vital_sqi.preprocess.removal_utilities module vital_sqi.preprocess.segment_split module vital_sqi.rule.auto_threshold module vital_sqi.rule.robust_classifier module vital_sqi.rule.rule_class module vital_sqi.rule.ruleset_class module vital_sqi.sqi.dtw_sqi module vital_sqi.sqi.hrv_sqi module vital_sqi.sqi.rpeaks_sqi module vital_sqi.sqi.standard_sqi module vital_sqi.sqi.waveform_sqi module

W

width (vital_sqi.rule.auto_threshold.Band property)

write_rule() (vital_sqi.rule.rule_class.Rule method)

Z

zero_crossings_rate_sqi() (in module vital_sqi.sqi.standard_sqi)